Detailed information of SNP:
|
SNP ID:
sf0820692113(Gbrowse)
Chromosome: chr08 Position: 20692113 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 57.27% | 42.73% |
| All Indica | 799 | 93.99% | 6.01% |
| All Japonica | 495 | 0.61% | 99.39% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 26.83% | 73.17% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820692113 | T->C | INTERGENIC | None |