Detailed information of SNP:
|
SNP ID:
sf0820707574(Gbrowse)
Chromosome: chr08 Position: 20707574 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 82.87% | 17.13% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 468 | 50.43% | 49.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 318 | 39.94% | 60.06% |
| Tropical Japonica | 87 | 87.36% | 12.64% |
| Japonica Intermediate | 63 | 52.38% | 47.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820707574 | A->G | INTERGENIC | None |