Detailed information of SNP:
|
SNP ID:
sf0820708200(Gbrowse)
Chromosome: chr08 Position: 20708200 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 65.56% | 34.44% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 497 | 8.85% | 91.15% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 9.85% | 90.15% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820708200 | C->G | LOC_Os08g33220(LOC_Os08g33220.1) | Non-Synonymous SNP |