Detailed information of SNP:
|
SNP ID:
sf0820730652(Gbrowse)
Chromosome: chr08 Position: 20730652 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1365 | 61.10% | 38.90% |
| All Indica | 784 | 94.52% | 5.48% |
| All Japonica | 497 | 6.84% | 93.16% |
| Aus | 30 | 90.00% | 10.00% |
| Indica I | 371 | 97.30% | 2.70% |
| Indica II | 206 | 91.75% | 8.25% |
| Indica Intermediate | 207 | 92.27% | 7.73% |
| Temperate Japonica | 335 | 7.76% | 92.24% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820730652 | A->G | LOC_Os08g33270(LOC_Os08g33270.1) | Non-Synonymous SNP |