Detailed information of SNP:
|
SNP ID:
sf0820731771(Gbrowse)
Chromosome: chr08 Position: 20731771 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 96.61% | 3.39% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 66 | 68.18% | 31.82% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820731771 | T->C | LOC_Os08g33270(LOC_Os08g33270.1) | Non-Synonymous SNP |