Detailed information of SNP:
|
SNP ID:
sf0820756343(Gbrowse)
Chromosome: chr08 Position: 20756343 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 60.97% | 39.03% |
| All Indica | 799 | 96.87% | 3.13% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820756343 | T->C | INTERGENIC | None |