Detailed information of SNP:
|
SNP ID:
sf0820793466(Gbrowse)
Chromosome: chr08 Position: 20793466 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1365 | 80.15% | 19.85% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 448 | 44.20% | 55.80% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 292 | 32.88% | 67.12% |
| Tropical Japonica | 92 | 81.52% | 18.48% |
| Japonica Intermediate | 64 | 42.19% | 57.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820793466 | C->T | INTERGENIC | None |