Detailed information of SNP:
|
SNP ID:
sf0820810214(Gbrowse)
Chromosome: chr08 Position: 20810214 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 78.63% | 21.37% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 493 | 43.81% | 56.19% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 31.02% | 68.98% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 67 | 46.27% | 53.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820810214 | A->C | LOC_Os08g33370(LOC_Os08g33370.2) | Non-Synonymous SNP |
| sf0820810214 | A->C | LOC_Os08g33370(LOC_Os08g33370.1) | Non-Synonymous SNP |