Detailed information of SNP:
|
SNP ID:
sf0820814249(Gbrowse)
Chromosome: chr08 Position: 20814249 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 53.63% | 46.37% |
| All Indica | 799 | 92.87% | 7.13% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 28.57% | 71.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820814249 | T->C | INTERGENIC | None |