Detailed information of SNP:
|
SNP ID:
sf0820831878(Gbrowse)
Chromosome: chr08 Position: 20831878 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 80.89% | 19.11% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 496 | 56.65% | 43.35% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 334 | 68.26% | 31.74% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820831878 | G->A | INTERGENIC | None |