Detailed information of SNP:
|
SNP ID:
sf0820836877(Gbrowse)
Chromosome: chr08 Position: 20836877 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 51.49% | 48.51% |
| All Indica | 788 | 89.59% | 10.41% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 371 | 88.41% | 11.59% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 204 | 87.25% | 12.75% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 26.19% | 73.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820836877 | C->T | INTERGENIC | None |