Detailed information of SNP:
|
SNP ID:
sf0820844984(Gbrowse)
Chromosome: chr08 Position: 20844984 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 75.18% | 24.82% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 497 | 56.34% | 43.66% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 68.06% | 31.94% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820844984 | C->T | INTERGENIC | None |