Detailed information of SNP:
|
SNP ID:
sf0820847844(Gbrowse)
Chromosome: chr08 Position: 20847844 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1291 | 75.68% | 24.32% |
| All Indica | 675 | 54.67% | 45.33% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 299 | 56.19% | 43.81% |
| Indica II | 185 | 29.73% | 70.27% |
| Indica Intermediate | 191 | 76.44% | 23.56% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820847844 | G->T | LOC_Os08g33420(LOC_Os08g33420.1) | INTRON |