Detailed information of SNP:
|
SNP ID:
sf0820862585(Gbrowse)
Chromosome: chr08 Position: 20862585 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 51.61% | 48.39% |
| All Indica | 782 | 90.03% | 9.97% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 362 | 91.44% | 8.56% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 209 | 84.21% | 15.79% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 25.64% | 74.36% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820862585 | A->T | INTERGENIC | None |