Detailed information of SNP:
|
SNP ID:
sf0820865573(Gbrowse)
Chromosome: chr08 Position: 20865573 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 59.36% | 40.64% |
| All Indica | 793 | 96.85% | 3.15% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 371 | 95.96% | 4.04% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820865573 | A->G | LOC_Os08g33450(LOC_Os08g33450.1) | Non-Synonymous SNP |