Detailed information of SNP:
|
SNP ID:
sf0820865866(Gbrowse)
Chromosome: chr08 Position: 20865866 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1342 | 86.96% | 13.04% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 424 | 59.43% | 40.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 278 | 45.32% | 54.68% |
| Tropical Japonica | 91 | 91.21% | 8.79% |
| Japonica Intermediate | 55 | 78.18% | 21.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820865866 | T->G | LOC_Os08g33450(LOC_Os08g33450.1) | Non-Synonymous SNP |