Detailed information of SNP:
|
SNP ID:
sf0820869641(Gbrowse)
Chromosome: chr08 Position: 20869641 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1334 | 81.78% | 18.22% |
| All Indica | 715 | 66.85% | 33.15% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 329 | 70.52% | 29.48% |
| Indica II | 189 | 46.56% | 53.44% |
| Indica Intermediate | 197 | 80.20% | 19.80% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820869641 | C->T | INTERGENIC | None |