Detailed information of SNP:
|
SNP ID:
sf0820869996(Gbrowse)
Chromosome: chr08 Position: 20869996 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 51.64% | 48.36% |
| All Indica | 788 | 89.85% | 10.15% |
| All Japonica | 496 | 0.60% | 99.40% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 372 | 93.28% | 6.72% |
| Indica II | 210 | 90.95% | 9.05% |
| Indica Intermediate | 206 | 82.52% | 17.48% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 23.08% | 76.92% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820869996 | G->A | INTERGENIC | None |