Detailed information of SNP:
|
SNP ID:
sf0820884754(Gbrowse)
Chromosome: chr08 Position: 20884754 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 73.64% | 26.36% |
| All Indica | 799 | 90.99% | 9.01% |
| All Japonica | 497 | 43.86% | 56.14% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 32.84% | 67.16% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820884754 | T->C | INTERGENIC | None |