Detailed information of SNP:
|
SNP ID:
sf0820885339(Gbrowse)
Chromosome: chr08 Position: 20885339 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 54.20% | 45.80% |
| All Indica | 799 | 93.24% | 6.76% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 32.50% | 67.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820885339 | C->T | INTERGENIC | None |