Detailed information of SNP:
|
SNP ID:
sf0820887919(Gbrowse)
Chromosome: chr08 Position: 20887919 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 53.03% | 46.97% |
| All Indica | 799 | 92.24% | 7.76% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 24.39% | 75.61% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820887919 | C->A | INTERGENIC | None |