Detailed information of SNP:
|
SNP ID:
sf0820889460(Gbrowse)
Chromosome: chr08 Position: 20889460 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 53.46% | 46.54% |
| All Indica | 798 | 92.48% | 7.52% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 94.92% | 5.08% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820889460 | G->A | INTERGENIC | None |