Detailed information of SNP:
|
SNP ID:
sf0820917158(Gbrowse)
Chromosome: chr08 Position: 20917158 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 75.88% | 24.12% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 496 | 58.27% | 41.73% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 69.55% | 30.45% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 67 | 59.70% | 40.30% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820917158 | T->C | INTERGENIC | None |