Detailed information of SNP:
|
SNP ID:
sf0820936381(Gbrowse)
Chromosome: chr08 Position: 20936381 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 59.27% | 40.73% |
| All Indica | 799 | 94.12% | 5.88% |
| All Japonica | 497 | 13.68% | 86.32% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820936381 | G->A | INTERGENIC | None |