Detailed information of SNP:
|
SNP ID:
sf0820940088(Gbrowse)
Chromosome: chr08 Position: 20940088 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 81.20% | 18.80% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 496 | 47.98% | 52.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 37.91% | 62.09% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 67 | 43.28% | 56.72% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820940088 | G->A | INTERGENIC | None |