Detailed information of SNP:
|
SNP ID:
sf0820945479(Gbrowse)
Chromosome: chr08 Position: 20945479 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 54.47% | 45.53% |
| All Indica | 799 | 91.74% | 8.26% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820945479 | C->T | INTERGENIC | None |