Detailed information of SNP:
|
SNP ID:
sf0820945692(Gbrowse)
Chromosome: chr08 Position: 20945692 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 54.64% | 45.36% |
| All Indica | 793 | 92.06% | 7.94% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 210 | 92.38% | 7.62% |
| Indica Intermediate | 208 | 85.58% | 14.42% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820945692 | T->C | INTERGENIC | None |