Detailed information of SNP:
|
SNP ID:
sf0820947303(Gbrowse)
Chromosome: chr08 Position: 20947303 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1368 | 65.35% | 34.65% |
| All Indica | 797 | 97.99% | 2.01% |
| All Japonica | 465 | 15.91% | 84.09% |
| Aus | 53 | 7.55% | 92.45% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 331 | 1.51% | 98.49% |
| Tropical Japonica | 73 | 65.75% | 34.25% |
| Japonica Intermediate | 61 | 34.43% | 65.57% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820947303 | A->G | LOC_Os08g33550(LOC_Os08g33550.1) | Synonymous |