Detailed information of SNP:
|
SNP ID:
sf0820965028(Gbrowse)
Chromosome: chr08 Position: 20965028 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 54.05% | 45.95% |
| All Indica | 799 | 90.99% | 9.01% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820965028 | C->T | INTERGENIC | None |