Detailed information of SNP:
|
SNP ID:
sf0820965483(Gbrowse)
Chromosome: chr08 Position: 20965483 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 78.94% | 21.06% |
| All Indica | 796 | 98.24% | 1.76% |
| All Japonica | 497 | 47.28% | 52.72% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 373 | 97.59% | 2.41% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 37.91% | 62.09% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820965483 | G->A | INTERGENIC | None |