Detailed information of SNP:
|
SNP ID:
sf0820965824(Gbrowse)
Chromosome: chr08 Position: 20965824 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 73.61% | 26.39% |
| All Indica | 799 | 94.12% | 5.88% |
| All Japonica | 495 | 48.89% | 51.11% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 333 | 39.94% | 60.06% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820965824 | T->C | INTERGENIC | None |