Detailed information of SNP:
|
SNP ID:
sf0820966116(Gbrowse)
Chromosome: chr08 Position: 20966116 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 59.04% | 40.96% |
| All Indica | 796 | 91.08% | 8.92% |
| All Japonica | 497 | 14.49% | 85.51% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 373 | 93.03% | 6.97% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 52.13% | 47.87% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820966116 | C->T | INTERGENIC | None |