Detailed information of SNP:



SNP ID: sf0820966233(Gbrowse)

Chromosome: chr08

Position: 20966233
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1416 58.83% 41.17%
All Indica796 90.70% 9.30%
All Japonica497 14.49% 85.51%
Aus67 26.87% 73.13%
Indica I373 93.03% 6.97%
Indica II212 93.40% 6.60%
Indica Intermediate211 83.89% 16.11%
Temperate Japonica335 2.09% 97.91%
Tropical Japonica94 52.13% 47.87%
Japonica Intermediate68 23.53% 76.47%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 50.00% 50.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0820966233 C->T INTERGENIC None