Detailed information of SNP:
|
SNP ID:
sf0820966563(Gbrowse)
Chromosome: chr08 Position: 20966563 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 58.22% | 41.78% |
| All Indica | 797 | 89.84% | 10.16% |
| All Japonica | 497 | 14.29% | 85.71% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 374 | 91.71% | 8.29% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 52.13% | 47.87% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820966563 | C->A | INTERGENIC | None |