Detailed information of SNP:
|
SNP ID:
sf0820971648(Gbrowse)
Chromosome: chr08 Position: 20971648 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 55.60% | 44.40% |
| All Indica | 799 | 93.87% | 6.13% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820971648 | T->C | LOC_Os08g33590(LOC_Os08g33590.1) | UTR_3_PRIME |