Detailed information of SNP:
|
SNP ID:
sf0820979305(Gbrowse)
Chromosome: chr08 Position: 20979305 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 52.78% | 47.22% |
| All Indica | 799 | 89.61% | 10.39% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 85.33% | 14.67% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820979305 | C->T | INTERGENIC | None |