Detailed information of SNP:
|
SNP ID:
sf0820987389(Gbrowse)
Chromosome: chr08 Position: 20987389 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 53.42% | 46.58% |
| All Indica | 799 | 89.74% | 10.26% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 86.13% | 13.87% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820987389 | G->A | INTERGENIC | None |