Detailed information of SNP:
|
SNP ID:
sf0820988526(Gbrowse)
Chromosome: chr08 Position: 20988526 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 51.44% | 48.56% |
| All Indica | 799 | 89.11% | 10.89% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 85.87% | 14.13% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820988526 | T->A | INTERGENIC | None |