Detailed information of SNP:
|
SNP ID:
sf0821011156(Gbrowse)
Chromosome: chr08 Position: 21011156 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 51.27% | 48.73% |
| All Indica | 798 | 89.10% | 10.90% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 85.60% | 14.40% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 26.19% | 73.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821011156 | C->T | INTERGENIC | None |