Detailed information of SNP:
|
SNP ID:
sf0821030337(Gbrowse)
Chromosome: chr08 Position: 21030337 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 61.58% | 38.42% |
| All Indica | 797 | 98.24% | 1.76% |
| All Japonica | 497 | 14.49% | 85.51% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821030337 | C->T | INTERGENIC | None |