Detailed information of SNP:
|
SNP ID:
sf0821036460(Gbrowse)
Chromosome: chr08 Position: 21036460 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 57.26% | 42.74% |
| All Indica | 798 | 95.99% | 4.01% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821036460 | G->A | INTERGENIC | None |