Detailed information of SNP:
|
SNP ID:
sf0821043049(Gbrowse)
Chromosome: chr08 Position: 21043049 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1322 | 85.33% | 14.67% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 407 | 55.77% | 44.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 268 | 36.57% | 63.43% |
| Tropical Japonica | 86 | 93.02% | 6.98% |
| Japonica Intermediate | 53 | 92.45% | 7.55% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 35 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821043049 | A->G | LOC_Os08g33700(LOC_Os08g33700.1) | INTRON |