Detailed information of SNP:
|
SNP ID:
sf0821065389(Gbrowse)
Chromosome: chr08 Position: 21065389 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 90.27% | 9.73% |
| All Indica | 799 | 96.75% | 3.25% |
| All Japonica | 497 | 86.32% | 13.68% |
| Aus | 66 | 50.00% | 50.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821065389 | C->T | INTERGENIC | None |