Detailed information of SNP:
|
SNP ID:
sf0821068811(Gbrowse)
Chromosome: chr08 Position: 21068811 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 58.33% | 41.67% |
| All Indica | 798 | 96.49% | 3.51% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 35.00% | 65.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821068811 | G->A | INTERGENIC | None |