Detailed information of SNP:
|
SNP ID:
sf0821083516(Gbrowse)
Chromosome: chr08 Position: 21083516 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 97.78% | 2.22% |
| All Indica | 796 | 100.00% | 0.00% |
| All Japonica | 475 | 93.89% | 6.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 78 | 73.08% | 26.92% |
| Japonica Intermediate | 63 | 88.89% | 11.11% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821083516 | C->T | LOC_Os08g33740(LOC_Os08g33740.1) | UTR_3_PRIME |