Detailed information of SNP:
|
SNP ID:
sf0821088554(Gbrowse)
Chromosome: chr08 Position: 21088554 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 95.36% | 4.64% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 480 | 87.29% | 12.71% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 322 | 88.20% | 11.80% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 65 | 70.77% | 29.23% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821088554 | C->T | LOC_Os08g33750(LOC_Os08g33750.2) | Non-Synonymous SNP |
| sf0821088554 | C->T | LOC_Os08g33750(LOC_Os08g33750.1) | Non-Synonymous SNP |