Detailed information of SNP:
|
SNP ID:
sf0821128189(Gbrowse)
Chromosome: chr08 Position: 21128189 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 73.51% | 26.49% |
| All Indica | 758 | 53.03% | 46.97% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 353 | 52.41% | 47.59% |
| Indica II | 205 | 34.63% | 65.37% |
| Indica Intermediate | 200 | 73.00% | 27.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821128189 | A->T | INTERGENIC | None |