Detailed information of SNP:
|
SNP ID:
sf0821158619(Gbrowse)
Chromosome: chr08 Position: 21158619 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 80.14% | 19.86% |
| All Indica | 768 | 65.10% | 34.90% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 356 | 69.38% | 30.62% |
| Indica II | 207 | 39.13% | 60.87% |
| Indica Intermediate | 205 | 83.90% | 16.10% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821158619 | C->T | INTERGENIC | None |