Detailed information of SNP:
|
SNP ID:
sf0821196453(Gbrowse)
Chromosome: chr08 Position: 21196453 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1386 | 95.24% | 4.76% |
| All Indica | 772 | 92.36% | 7.64% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 62 | 95.16% | 4.84% |
| Indica I | 361 | 90.86% | 9.14% |
| Indica II | 206 | 96.60% | 3.40% |
| Indica Intermediate | 205 | 90.73% | 9.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821196453 | A->G | LOC_Os08g33860(LOC_Os08g33860.2) | INTRON |
| sf0821196453 | A->G | LOC_Os08g33860(LOC_Os08g33860.1) | INTRON |