Detailed information of SNP:
|
SNP ID:
sf0821200464(Gbrowse)
Chromosome: chr08 Position: 21200464 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 93.20% | 6.80% |
| All Indica | 796 | 96.48% | 3.52% |
| All Japonica | 493 | 87.02% | 12.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 97.05% | 2.95% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 46.74% | 53.26% |
| Japonica Intermediate | 67 | 80.60% | 19.40% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821200464 | C->T | LOC_Os08g33870(LOC_Os08g33870.1) | Synonymous |